David Lougheed

Publications

Submitted & Preprint

  1. The BQC19 cohort: large scale, in-depth, multi-omics characterisation of Quebec COVID-19 patients

    David Bujold, Solomia Yanishevsky, Tania Schramek, Mylène Bertrand, Julie Bérubé, David Brownlee, Danielle Perley, Étienne Collette, Doris Ransy, … David R Lougheed, … Madelaine Durand, Simon Rousseau, Daniel Auld, Guillaume Bourque. Under review in Scientific Data.

  2. Insights on macrosynteny, ′rebel′ genes, and a new sex-linked region in anurans from comparative genomics and a new chromosome-level genome for the western chorus frog (2024)

    Ying Chen, David R Lougheed, Zhengxin Sun, Jeffrey Ethier, Vance L Trudeau, Stephen C Lougheed. BioRxiv preprint. DOI: 10.1101/2024.10.27.620512

Published

  1. Enhancing metabarcoding of freshwater biotic communities: a new online tool for primer selection and exploring data from 14 primer pairs (2024)

    Orianne Tournayre, Haolun Tian, David R Lougheed, Matthew JS Windle, Sheldon Lambert, Jennipher Carter, Zhengxin Sun, Jeff Ridal, Yuxiang Wang, Brian F Cumming, Shelley E Arnott, Stephen C Lougheed. Environmental DNA. DOI: 10.1002/edn3.590

  2. EpiVar Browser: advanced exploration of epigenomics data under controlled access (2024)

    David R Lougheed, Hanshi Liu, Katherine A Aracena, Romain Grégoire, Alain Pacis, Tomi Pastinen, Luis B Barreiro, Yann Joly, David Bujold, Guillaume Bourque. Bioinformatics. DOI: 10.1093/bioinformatics/btae136

  3. Epigenetic variation impacts individual differences in the transcriptional response to influenza infection (2024)

    Katherine A Aracena, Yen-Lung Lin, Kaixuan Luo, Alain Pacis, Saideep Gona, Zepeng Mu, Vania Yotova, Renata Sindeaux, Albena Pramatarova, Marie-Michelle Simon, Xun Chen, Cristian Groza, David Lougheed, Romain Grégoire, David Brownlee, Yang Li, Xin He, David Bujold, Tomi Pastinen, Guillaume Bourque, Luis B Barreiro. Nature Genetics. DOI: 10.1038/s41588-024-01668-z

  4. baRcodeR: An open‐source R package for sample labelling (2020)

    Yihan Wu, David R Lougheed, Stephen C Lougheed, Kristy Moniz, Virginia K Walker, Robert I Colautti. Methods in Ecology and Evolution. DOI: 10.1111/2041-210X.13405

  5. Genome-wide microhomologies enable precise template-free editing of biologically relevant deletion mutations (2019)

    Janin Grajcarek, Jean Monlong, Yoko Nishinaka-Arai, Michiko Nakamura, Miki Nagai, Shiori Matsuo, David Lougheed, Hidetoshi Sakurai, Megumu K. Saito, Guillaume Bourque & Knut Woltjen. Nature Communications. DOI: 10.1038/s41467-019-12829-8